Ben has answered your question directly ("I want to write the output of ...") using redir, but a more natural (to me) approach for this would be (assuming you want the ch007.html text at the current line)
:let n = -1
:1,.g/^# /let n += 1
''
:put =printf('ch%03d.html, n)
The :g leaves the cursor at the last match so '' is used to go back to where you started. (C programmers know about printf, but in case you don't %03d means print an integer in a field 3 characters wide with leading zeroes.)
Regards, John Little
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